STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP52513.1DNA-directed RNA polymerase subunit omega. (95 aa)    
Predicted Functional Partners:
SFP65822.1
DNA-directed RNA polymerase subunit beta'.
 
 0.999
SFP65845.1
RNA polymerase Rpb2, domain 2.
 
 0.999
SFP03367.1
DEAD/DEAH box helicase.
    
 0.996
SFP10903.1
DNA-directed RNA polymerase subunit alpha.
 
 0.995
SFP10970.1
DNA-directed RNA polymerase subunit alpha.
 
 0.995
SFP00170.1
RNA polymerase primary sigma factor.
 
 
 0.990
SFP03769.1
NusA antitermination factor.
 
 0.981
SFP19815.1
Small subunit ribosomal protein S2.
  
 0.975
SFP11258.1
Large subunit ribosomal protein L6.
   
   0.973
SFP52535.1
Guanylate kinase.
  
  
 0.969
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.