STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP55217.1Carbon storage regulator, CsrA. (68 aa)    
Predicted Functional Partners:
SFP58638.1
Host factor-I protein.
   
  
 0.679
SFP09939.1
Two-component system, NarL family, sensor histidine kinase BarA.
  
  
 0.610
SFP01941.1
Host factor-I protein.
   
  
 0.605
SFP55242.1
alanyl-tRNA synthetase.
       0.524
SFP66211.1
Response regulator receiver domain-containing protein.
  
   0.522
SFO97701.1
Transcriptional regulator, TraR/DksA family.
   
  
 0.435
SFP55287.1
Recombination protein RecA.
     
 0.415
SFP23738.1
HPt (histidine-containing phosphotransfer) domain-containing protein.
     
 0.408
SFP23759.1
Two-component system, OmpR family, aerobic respiration control sensor histidine kinase ArcB.
     
 0.408
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.