STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP55264.1Regulatory protein. (157 aa)    
Predicted Functional Partners:
SFP55287.1
Recombination protein RecA.
  
 
 0.923
SFP18287.1
DNA repair protein RadA/Sms.
  
  
 0.753
SFP39468.1
Hypothetical protein.
  
     0.563
SFP42250.1
Holliday junction DNA helicase subunit RuvA.
 
  
 0.522
SFP55242.1
alanyl-tRNA synthetase.
       0.499
SFP42003.1
Holliday junction endonuclease RuvC.
  
  
 0.494
SFP35235.1
UDP-N-acetylglucosamine-N- acetylmuramylpentapeptide N-acetylglucosamine transferase.
     
 0.487
SFP24113.1
Outer membrane lipoprotein LolB.
  
     0.472
SFP15851.1
DNA repair protein RecN (Recombination protein N).
  
  
 0.456
SFP29116.1
ATP-dependent DNA helicase RecG.
 
  
 0.443
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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