STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP57249.1Uncharacterized lipoprotein. (380 aa)    
Predicted Functional Partners:
SFP19962.1
Outer membrane protein insertion porin family.
  
 0.992
SFP63944.1
Beta-barrel assembly machine subunit BamD.
    
 0.981
SFP21732.1
Outer membrane protein assembly factor BamE, lipoprotein component of the BamABCDE complex.
  
 0.957
SFP01426.1
Outer membrane protein assembly factor BamB.
  
 0.944
SFP06932.1
ProP effector.
  
    0.806
SFP61352.1
Lipopolysaccharide export system protein LptC.
  
     0.773
SFP23383.1
Hypothetical protein.
  
     0.767
SFP01103.1
Lipoprotein NlpI.
  
   
 0.758
SFP00809.1
Hypothetical protein.
  
     0.733
SFP14465.1
DNA-binding protein H-NS.
  
     0.731
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.