STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP60279.1DNA-binding protein HU-beta. (93 aa)    
Predicted Functional Partners:
SFP60252.1
PD-(D/E)XK nuclease superfamily protein.
       0.682
SFP55176.1
Replicative DNA helicase.
    
 0.547
SFP00148.1
DNA primase.
    
 0.538
SFP47519.1
Hypothetical protein.
    
 0.537
SFP64612.1
dnaA protein helix-turn-helix.
    
 0.537
SFP46850.1
Replication restart DNA helicase PriA.
    
  0.524
SFP20185.1
Small subunit ribosomal protein S20.
  
  
 0.462
SFP00732.1
Regulatory inactivation of DnaA Hda protein.
    
 0.441
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.