STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP61269.1phospholipid/cholesterol/gamma-HCH transport system permease protein. (259 aa)    
Predicted Functional Partners:
SFP61249.1
phospholipid/cholesterol/gamma-HCH transport system substrate-binding protein.
 0.999
SFP61292.1
phospholipid/cholesterol/gamma-HCH transport system ATP-binding protein.
 0.999
SFP00980.1
Polar amino acid transport system substrate-binding protein.
     
 0.993
SFP61228.1
Phospholipid transport system substrate-binding protein.
 
 0.993
SFP07383.1
Stage II sporulation protein AA (anti-sigma F factor antagonist).
   
  0.983
SFP24636.1
Lipopolysaccharide export system permease protein.
  
  
 0.972
SFP61392.1
Lipopolysaccharide export system ATP-binding protein.
   
  0.969
SFP61202.1
Phospholipid transport system transporter-binding protein.
  
 0.966
SFP24661.1
Lipopolysaccharide export system permease protein.
  
  
 0.955
SFP53006.1
Ribosome-dependent ATPase.
    
 0.866
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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