STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP63881.1ATP-dependent Clp protease ATP-binding subunit ClpB. (865 aa)    
Predicted Functional Partners:
SFP45494.1
Molecular chaperone DnaK.
  
 
 0.924
SFP09939.1
Two-component system, NarL family, sensor histidine kinase BarA.
 
 
 
 0.872
SFP45471.1
Molecular chaperone DnaJ.
  
 0.838
SFP15749.1
Tellurite resistance protein TerB.
  
 0.825
SFP50365.1
Hypothetical protein.
  
 0.825
SFP29479.1
Type VI secretion system protein ImpC.
 
 0.787
SFP54828.1
ATP-dependent Clp protease, protease subunit.
   
 0.734
SFP71049.1
ATP-dependent Clp protease, protease subunit.
   
 0.734
SFP74811.1
ATP-dependent Clp protease, protease subunit.
   
 0.734
SFP45516.1
Molecular chaperone GrpE.
  
 
 0.683
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.