STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP63922.123S rRNA pseudouridine1911/1915/1917 synthase. (330 aa)    
Predicted Functional Partners:
SFP63902.1
Conserved hypothetical protein.
 
    0.949
SFP00073.1
GTP-binding protein.
 
 
 
 0.881
SFP12999.1
Ribosome-associated protein.
    
 
 0.809
SFP11798.1
Large subunit ribosomal protein L3.
 
 
   0.777
SFP02108.1
23S rRNA (guanosine2251-2'-O)-methyltransferase.
 
 
 
 0.762
SFO96027.1
Ribosome-associated protein.
  
 
 0.748
SFP00038.1
Large subunit ribosomal protein L21.
   
   0.735
SFP10936.1
Large subunit ribosomal protein L17.
   
   0.735
SFP11129.1
Large subunit ribosomal protein L15.
   
   0.725
SFP34797.1
Large subunit ribosomal protein L13.
   
   0.724
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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