STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP71898.1N-acetylmuramoyl-L-alanine amidase. (172 aa)    
Predicted Functional Partners:
SFP35320.1
Cell division protein FtsA.
   
 0.720
SFP58709.1
N-acetylmuramoyl-L-alanine amidase.
  
 0.677
SFP52330.1
OmpA-OmpF porin, OOP family.
    
 0.643
SFP35293.1
Cell division protein FtsQ.
   
 0.573
SFO97670.1
Penicillin-binding protein 1B.
   
 
 0.570
SFP42073.1
Peptidoglycan-associated lipoprotein.
    
 0.546
SFP30826.1
N-acetylmuramoyl-L-alanine amidase.
  
 0.543
SFO96076.1
Penicillin-binding protein 2.
   
 0.528
SFP35064.1
Cell division protein FtsI (penicillin-binding protein 3).
   
 0.528
SFO96099.1
Rod shape determining protein RodA.
   
 0.484
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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