STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFP72952.1Lipopolysaccharide biosynthesis protein, LPS:glycosyltransferase. (719 aa)    
Predicted Functional Partners:
SFP33954.1
Glycosyltransferase, GT2 family.
 
 0.838
SFP67378.1
Protein of unknown function.
 
 0.676
SFP72976.1
Glucosamine--fructose-6-phosphate aminotransferase (isomerizing).
     
 0.627
SFP72933.1
Hypothetical protein.
    
 0.615
SFP14516.1
Tetratricopeptide repeat-containing protein.
  
 0.594
SFP21771.1
SseB protein N-terminal domain-containing protein.
  
 0.594
SFP36376.1
SNF2 family N-terminal domain-containing protein.
    
  0.569
SFP37414.1
SNF2 family N-terminal domain-containing protein.
    
  0.569
SFP53568.1
SWIM zinc finger.
    
  0.569
SFP60110.1
SNF2 family N-terminal domain-containing protein.
    
  0.569
Your Current Organism:
Ruminobacter amylophilus
NCBI taxonomy Id: 867
Other names: ATCC 29744, Bacteroides amylophilus, R. amylophilus, Ruminobacter amylophilum
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