STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
URB1URB1 ribosome biogenesis homolog. (2162 aa)    
Predicted Functional Partners:
PDCD11
Programmed cell death 11.
   
 
 0.975
HEATR1
HEAT repeat containing 1.
   
 
 0.933
POLR1A
RNA polymerase I subunit A.
   
    0.924
DDX24
DEAD-box helicase 24.
   
 
 0.916
UTP20
UTP20 small subunit processome component.
   
  
 0.915
NAT10
N-acetyltransferase 10.
   
 
 0.903
ENSPTXP00000015380
annotation not available
   
  
 0.899
CEBPZ
CCAAT enhancer binding protein zeta.
   
 
 0.892
POLR1B
RNA polymerase I subunit B.
   
  
 0.891
NOC2L
NOC2 like nucleolar associated transcriptional repressor.
   
 
 0.878
Your Current Organism:
Pseudonaja textilis
NCBI taxonomy Id: 8673
Other names: MNHP 3944, P. textilis, eastern brown snake
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.