Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RAB3BRAB3B, member RAS oncogene family. (219 aa)    
Predicted Functional Partners:
RIMS2
Regulating synaptic membrane exocytosis 2.
    
 0.973
SYTL4
Synaptotagmin like 4.
   
 0.830
RABIF
RAB interacting factor.
    
 
 0.828
CHM
CHM Rab escort protein.
    
 0.816
SYT2
Synaptotagmin 2.
   
 0.755
SYT1
Synaptotagmin 1.
   
 0.755
SNAP25
Synaptosome associated protein 25.
   
 0.747
SYT5
Synaptotagmin 5.
   
 0.743
RIMS3
Regulating synaptic membrane exocytosis 3.
    
 0.742
ENSPTXP00000012514
annotation not available
    
 0.742
Your Current Organism:
Pseudonaja textilis
NCBI taxonomy Id: 8673
Other names: MNHP 3944, P. textilis, eastern brown snake
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