STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEP61615.1Sel1 repeat-containing protein. (160 aa)    
Predicted Functional Partners:
SEP57892.1
Hypothetical protein.
  
     0.668
SEP57547.1
Delta-1-pyrroline-5-carboxylate dehydrogenase; Oxidizes proline to glutamate for use as a carbon and nitrogen source; In the C-terminal section; belongs to the aldehyde dehydrogenase family.
    
  0.650
SEQ41471.1
Hypothetical protein.
  
     0.629
SEQ11765.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.529
SEP92847.1
Signal transduction histidine kinase.
   
 0.513
mnmG
tRNA uridine 5-carboxymethylaminomethyl modification enzyme; NAD-binding protein involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA-cmnm(5)s(2)U34; Belongs to the MnmG family.
    
   0.508
SEQ40406.1
PAS domain S-box-containing protein.
 
 
 0.507
SEQ17315.1
Protein of unknown function.
  
     0.473
SEQ43015.1
c-di-GMP-binding flagellar brake protein YcgR, contains PilZNR and PilZ domains.
  
     0.467
SEP95161.1
PAS domain S-box-containing protein.
   
 0.443
Your Current Organism:
Ectothiorhodospira magna
NCBI taxonomy Id: 867345
Other names: DSM 22250, E. magna, Ectothiorhodospira magna Bryantseva et al. 2011, Ectothiorhodospira sp. B7-7, Ectothiorhodospira sp. M10, VKM B-2537, strain B7-7
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.