STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEQ01033.1DamX protein. (534 aa)    
Predicted Functional Partners:
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.912
SEQ01016.1
dGTPase; Belongs to the dGTPase family. Type 2 subfamily.
    
  0.871
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
  
    0.839
SEQ11765.1
Flagellar basal-body rod protein FlgC; Belongs to the flagella basal body rod proteins family.
    
   0.772
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication.
       0.702
guaA
GMP synthase (glutamine-hydrolysing); Catalyzes the synthesis of GMP from XMP.
    
  0.685
nusA
NusA antitermination factor; Participates in both transcription termination and antitermination.
  
    0.664
SEQ00859.1
Type IV pilus assembly protein PilW.
 
     0.650
SEQ11615.1
Flagella synthesis protein FlgN.
  
     0.638
SEP96453.1
Outer membrane protein (porin).
  
     0.615
Your Current Organism:
Ectothiorhodospira magna
NCBI taxonomy Id: 867345
Other names: DSM 22250, E. magna, Ectothiorhodospira magna Bryantseva et al. 2011, Ectothiorhodospira sp. B7-7, Ectothiorhodospira sp. M10, VKM B-2537, strain B7-7
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.