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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY29487.1Xylose isomerase domain-containing protein TIM barrel; COGs: COG1082 Sugar phosphate isomerase/epimerase; InterPro IPR012307: IPR011418; KEGG: rbi:RB2501_05700 hypothetical protein; PFAM: Xylose isomerase, TIM barrel domain; AP endonuclease, family 2, C-terminal; SPTR: Putative uncharacterized protein; PFAM: AP endonuclease family 2 C terminus; Xylose isomerase-like TIM barrel. (350 aa)    
Predicted Functional Partners:
ADY29489.1
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: rbi:RB2501_05720 oxidoreductase, Gfo/Idh/MocA family protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase, Gfo/Idh/MocA family protein; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
  
 0.885
ADY29485.1
Protein of unknown function DUF1080; InterPro IPR010496; KEGG: rbi:RB2501_05690 putative multi-domain protein; PFAM: Protein of unknown function DUF1080; SPTR: Putative multi-domain protein; PFAM: Domain of Unknown Function (DUF1080).
 
     0.876
ADY29486.1
Protein of unknown function DUF1080; InterPro IPR010496; KEGG: rbi:RB2501_05695 probable secreted glycosyl hydrolase; PFAM: Protein of unknown function DUF1080; SPTR: Probable secreted glycosyl hydrolase; PFAM: Domain of Unknown Function (DUF1080).
 
     0.791
ADY29491.1
Glucose-methanol-choline oxidoreductase; COGs: COG2303 Choline dehydrogenase and related flavoprotein; InterPro IPR006076: IPR000172; KEGG: rbi:RB2501_05745 oxidoreductase, GMC family protein; PFAM: Glucose-methanol-choline oxidoreductase, N-terminal; FAD dependent oxidoreductase; SPTR: Oxidoreductase, GMC family protein; PFAM: GMC oxidoreductase.
 
     0.714
ADY29427.1
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR006311: IPR000683; KEGG: rbi:RB2501_05855 putative dehydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain.
 
  
 0.556
ADY30387.1
COGs: COG3828 conserved hypothetical protein; KEGG: phe:Phep_0731 Crp/FNR family transcriptional regulator; SPTR: Crp/FNR family transcriptional regulator; PFAM: Trehalose utilisation.
 
  
 0.553
ADY30518.1
COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683; KEGG: fbc:FB2170_12816 predicted dehydrogenase; PFAM: Oxidoreductase, N-terminal; PRIAM: Trans-1,2-dihydrobenzene-1,2-diol dehydrogenase; SPTR: Predicted dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
 
  
 0.540
ADY29488.1
ASCH domain protein; COGs: COG4405 conserved hypothetical protein; InterPro IPR007374; KEGG: fbc:FB2170_04955 hypothetical protein; PFAM: ASCH domain; SPTR: Putative uncharacterized protein; PFAM: ASCH domain.
       0.513
ADY28290.1
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR006311; KEGG: fbc:FB2170_10661 probable NADH-dependent dehydrogenase; PFAM: Oxidoreductase, N-terminal; SPTR: Probable NADH-dependent dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold; Oxidoreductase family, C-terminal alpha/beta domain; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence.
  
  
 0.462
ADY31092.1
Oxidoreductase domain protein; COGs: COG0673 dehydrogenase and related protein; InterPro IPR000683: IPR004104; KEGG: fbc:FB2170_13296 oxidoreductase, Gfo/Idh/MocA family protein; PFAM: Oxidoreductase, N-terminal; Oxidoreductase, C-terminal; SPTR: Oxidoreductase, Gfo/Idh/MocA family protein; PFAM: Oxidoreductase family, C-terminal alpha/beta domain; Oxidoreductase family, NAD-binding Rossmann fold.
  
  
 0.462
Your Current Organism:
Cellulophaga lytica
NCBI taxonomy Id: 867900
Other names: C. lytica DSM 7489, Cellulophaga lytica ATCC 23178, Cellulophaga lytica DSM 7489, Cellulophaga lytica IAM 14306, Cellulophaga lytica str. DSM 7489, Cellulophaga lytica strain DSM 7489
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