STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ADY30393.1COGs: COG0507 ATP-dependent exoDNAse (exonuclease V) alpha subunit - helicase superfamily I member; KEGG: fbc:FB2170_15178 ATP-dependent exoDNAse (exonuclease V), alpha subunit - helicase superfamily I member; SPTR: ATP-dependent exoDNAse (Exonuclease V), alpha subunit-helicase superfamily I member. (479 aa)    
Predicted Functional Partners:
ADY30392.1
KEGG: fbc:FB2170_15183 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.714
ADY30391.1
KEGG: fbc:FB2170_15188 hypothetical protein; SPTR: Putative uncharacterized protein.
 
     0.663
ADY30394.1
KEGG: fbc:FB2170_15173 hypothetical protein; SPTR: Putative uncharacterized protein.
       0.636
ADY29073.1
UvrD/REP helicase; COGs: COG1074 ATP-dependent exoDNAse (exonuclease V) beta subunit (contains helicase and exonuclease domains); InterPro IPR000212; KEGG: fbc:FB2170_06530 ATP-dependent helicase; PFAM: DNA helicase, UvrD/REP type; SPTR: ATP-dependent helicase; PFAM: UvrD/REP helicase; Uncharacterized conserved protein (DUF2075).
 
 
 0.614
ADY30390.1
Methyltransferase; COGs: COG0742 N6-adenine-specific methylase; InterPro IPR004398; KEGG: fbc:FB2170_15193 putative methyltransferase; PFAM: RNA methyltransferase, RsmD; SPTR: Putative methyltransferase; TIGRFAM: RNA methyltransferase, RsmD; PFAM: Conserved hypothetical protein 95; TIGRFAM: RNA methyltransferase, RsmD family.
       0.608
kdsB
3-deoxy-manno-octulosonate cytidylyltransferase; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria.
       0.599
ADY29704.1
TonB family protein; InterPro IPR006260; KEGG: rbi:RB2501_03600 TonB; PFAM: TonB, C-terminal; SPTR: TonB; TIGRFAM: TonB, C-terminal; PFAM: Gram-negative bacterial tonB protein; TIGRFAM: TonB family C-terminal domain.
  
     0.595
ADY30197.1
UvrD/REP helicase; COGs: COG0210 Superfamily I DNA and RNA helicase; InterPro IPR000212; KEGG: nth:Nther_0809 LexA repressor; PFAM: DNA helicase, UvrD/REP type; SPTR: LexA repressor; PFAM: UvrD/REP helicase.
  
 
 0.593
ADY30396.1
Haloacid dehalogenase domain protein hydrolase; COGs: COG1011 hydrolase (HAD superfamily); InterPro IPR005834; KEGG: fbc:FB2170_15163 hypothetical protein; PFAM: Haloacid dehalogenase-like hydrolase; SPTR: Putative uncharacterized protein; PFAM: haloacid dehalogenase-like hydrolase.
       0.578
purL
Phosphoribosylformylglycinamidine synthase; Phosphoribosylformylglycinamidine synthase involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate.
  
    0.544
Your Current Organism:
Cellulophaga lytica
NCBI taxonomy Id: 867900
Other names: C. lytica DSM 7489, Cellulophaga lytica ATCC 23178, Cellulophaga lytica DSM 7489, Cellulophaga lytica IAM 14306, Cellulophaga lytica str. DSM 7489, Cellulophaga lytica strain DSM 7489
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.