Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
ADY31026.1KEGG: pcb:PC301176.00.0 hypothetical protein; SPTR: Putative uncharacterized protein. (315 aa)    
Predicted Functional Partners:
ADY31024.1
InterPro IPR010093; KEGG: sli:Slin_3280 DNA binding domain protein, excisionase family; SPTR: DNA binding domain protein, excisionase family; TIGRFAM: Excisionase/Xis, DNA-binding; PFAM: Bacteriophage Lambda NinG protein; TIGRFAM: DNA binding domain, excisionase family.
       0.786
ADY31025.1
Integrase family protein; COGs: COG4974 Site-specific recombinase XerD; InterPro IPR002104; KEGG: zpr:ZPR_1828 tyrosine type site-specific recombinase; PFAM: Integrase, catalytic core, phage; SPTR: Tyrosine type site-specific recombinase; PFAM: Phage integrase family; Belongs to the 'phage' integrase family.
       0.780
ADY31027.1
DNA binding domain protein, excisionase family; InterPro IPR010093; KEGG: zpr:ZPR_1827 putative excisionase; SPTR: Putative excisionase; TIGRFAM: Excisionase/Xis, DNA-binding; TIGRFAM: DNA binding domain, excisionase family.
       0.498
ADY31030.1
KEGG: bth:BT_1638 hypothetical protein; SPTR: Putative uncharacterized protein; PFAM: Primase C terminal 2 (PriCT-2).
       0.486
ADY31028.1
KEGG: fps:FP2174 hypothetical protein; SPTR: DNA binding domain, excisionase family protein.
       0.470
ADY31029.1
VirE protein; InterPro IPR014907; KEGG: bth:BT_4619 hypothetical protein; PFAM: VirE N-terminal; SPTR: Putative uncharacterized protein; PFAM: VirE N-terminal domain.
       0.470
mnmE
tRNA modification GTPase mnmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.449
Your Current Organism:
Cellulophaga lytica
NCBI taxonomy Id: 867900
Other names: C. lytica DSM 7489, Cellulophaga lytica ATCC 23178, Cellulophaga lytica DSM 7489, Cellulophaga lytica IAM 14306, Cellulophaga lytica str. DSM 7489, Cellulophaga lytica strain DSM 7489
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