STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL96342.1Type I site-specific deoxyribonuclease, HsdR family; Subunit R is required for both nuclease and ATPase activities, but not for modification. (1067 aa)    
Predicted Functional Partners:
AFL96339.1
PFAM: N-6 DNA Methylase; HsdM N-terminal domain; TIGRFAM: type I restriction system adenine methylase (hsdM).
 
 
 0.972
AFL96343.1
Putative metal-dependent hydrolase; PFAM: Protein of unknown function DUF45.
   
 0.951
AFL96341.1
PFAM: Type I restriction modification DNA specificity domain.
 
  
 0.931
AFL96974.1
Type I restriction-modification system methyltransferase subunit; PFAM: N-6 DNA Methylase.
 
 
 0.912
AFL96975.1
PFAM: Type I restriction modification DNA specificity domain.
 
  
 0.865
AFL96338.1
PFAM: Type I restriction modification DNA specificity domain.
  
     0.774
AFL96976.1
Hypothetical protein.
  
    0.652
AFL96340.1
Virulence protein.
  
    0.602
AFL96709.1
DNA/RNA helicase, superfamily II; PFAM: Helicase conserved C-terminal domain; SNF2 family N-terminal domain.
  
  
 0.447
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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