STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL96524.1alpha-L-fucosidase; PFAM: F5/8 type C domain; Alpha-L-fucosidase. (700 aa)    
Predicted Functional Partners:
AFL96526.1
PFAM: Sodium:solute symporter family; TIGRFAM: transporter, SSS family.
 
     0.732
AFL96527.1
PFAM: N-acylglucosamine 2-epimerase (GlcNAc 2-epimerase).
 
     0.699
AFL96525.1
PFAM: Domain of unknown function (DUF386); TIGRFAM: uncharacterized protein, YhcH/YjgK/YiaL family.
       0.678
AFL98456.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2264).
 
     0.650
AFL97920.1
Putative dehydrogenase; PFAM: Oxidoreductase family, NAD-binding Rossmann fold.
  
     0.600
AFL98478.1
RagB/SusD family protein; PFAM: SusD family.
  
    0.568
AFL98101.1
PFAM: BNR/Asp-box repeat.
 
  
 0.526
AFL98261.1
Beta-galactosidase/beta-glucuronidase; PFAM: domain; Glycosyl hydrolases family 2, TIM barrel domain; Beta galactosidase small chain; Glycosyl hydrolases family 2, sugar binding domain.
   
 0.512
AFL96523.1
PFAM: Lyase, N terminal; Lyase, catalytic; Polysaccharide lyase family 8, super-sandwich domain.
       0.494
AFL96528.1
PFAM: Ion transport protein.
       0.481
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.