STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL96534.1PFAM: Bacterial membrane protein YfhO. (863 aa)    
Predicted Functional Partners:
AFL96535.1
Hypothetical protein.
       0.773
AFL96693.1
4-hydroxybenzoate polyprenyltransferase-like prenyltransferase; PFAM: Protein of unknown function (DUF2723).
  
     0.772
AFL97954.1
Hypothetical protein.
  
     0.744
AFL97328.1
Long-chain fatty acid transport protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
 
     0.734
AFL97751.1
Hypothetical protein.
  
     0.726
AFL97980.1
PFAM: Protein of unknown function (DUF3109).
  
     0.687
AFL96447.1
Hypothetical protein.
  
     0.664
AFL96717.1
Outer membrane receptor protein; PFAM: TonB-dependent Receptor Plug Domain.
  
     0.657
AFL96312.1
Hypothetical protein.
  
     0.653
AFL96262.1
Outer membrane protein/protective antigen OMA87; PFAM: Surface antigen.
  
     0.647
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.