STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL96890.1PFAM: Bacterial DNA-binding protein; TIGRFAM: DNA-binding protein, histone-like, putative. (127 aa)    
Predicted Functional Partners:
AFL96891.1
Hypothetical protein.
       0.773
AFL96847.1
Hypothetical protein.
  
     0.742
AFL96692.1
Hypothetical protein.
  
     0.734
AFL96894.1
PFAM: GH3 auxin-responsive promoter.
  
    0.540
AFL96892.1
DNA repair protein radc; PFAM: Protein of unknown function (DUF2466); TIGRFAM: DNA repair protein radc; Belongs to the UPF0758 family.
       0.539
AFL96893.1
PFAM: Nicotinamide mononucleotide transporter; TIGRFAM: nicotinamide mononucleotide transporter PnuC.
       0.539
AFL96895.1
Metalloendopeptidase-like membrane protein; PFAM: Peptidase family M23.
       0.522
AFL96889.1
PFAM: Protein of unknown function (DUF805).
       0.470
AFL97124.1
Hypothetical protein.
  
     0.402
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.