STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL96899.1TIGRFAM: diphosphomevalonate decarboxylase. (355 aa)    
Predicted Functional Partners:
AFL98472.1
PFAM: NUDIX domain; TIGRFAM: isopentenyl-diphosphate delta-isomerase, type 1.
 
 
 0.989
AFL97218.1
PFAM: GHMP kinases N terminal domain.
 
  
 0.936
AFL97048.1
Geranylgeranyl pyrophosphate synthase; PFAM: Polyprenyl synthetase; Belongs to the FPP/GGPP synthase family.
  
 0.935
AFL98043.1
Mevalonate kinase.
 
  
 0.922
AFL97034.1
PFAM: Hydroxymethylglutaryl-coenzyme A reductase; TIGRFAM: hydroxymethylglutaryl-CoA reductase, degradative; Belongs to the HMG-CoA reductase family.
 
  
 0.849
AFL96897.1
Hypothetical protein.
       0.757
AFL96898.1
Hypothetical protein.
       0.757
AFL96900.1
PFAM: Protein of unknown function (DUF3244); TIGRFAM: Por secretion system C-terminal sorting domain.
       0.483
AFL96901.1
Hypothetical protein.
 
     0.480
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.