AFL96901.1 protein (Ornithobacterium rhinotracheale)

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

AFL96901.1

Hypothetical protein. (276 aa)

Predicted Functional Partners:

AFL96830.1

0.902

AFL96829.1

0.892

AFL96832.1

0.735

AFL97414.1

0.730

AFL96542.1

0.693

AFL97296.1

0.676

AFL96766.1

0.661

AFL96765.1

0.621

AFL97258.1

0.621

AFL97327.1

0.616

Your Current Organism:

Ornithobacterium rhinotracheale

NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AFL96542.1	AFL96901.1	Ornrh_0324	Ornrh_0703	Hypothetical protein.	Hypothetical protein.	0.693
AFL96765.1	AFL96766.1	Ornrh_0564	Ornrh_0565	Biopolymer transport protein; PFAM: Autophagy-related protein 27; MotA/TolQ/ExbB proton channel family.	PFAM: Biopolymer transport protein ExbD/TolR.	0.988
AFL96765.1	AFL96829.1	Ornrh_0564	Ornrh_0628	Biopolymer transport protein; PFAM: Autophagy-related protein 27; MotA/TolQ/ExbB proton channel family.	PFAM: Biopolymer transport protein ExbD/TolR.	0.837
AFL96765.1	AFL96830.1	Ornrh_0564	Ornrh_0629	Biopolymer transport protein; PFAM: Autophagy-related protein 27; MotA/TolQ/ExbB proton channel family.	PFAM: Biopolymer transport protein ExbD/TolR.	0.846
AFL96765.1	AFL96901.1	Ornrh_0564	Ornrh_0703	Biopolymer transport protein; PFAM: Autophagy-related protein 27; MotA/TolQ/ExbB proton channel family.	Hypothetical protein.	0.621
AFL96766.1	AFL96765.1	Ornrh_0565	Ornrh_0564	PFAM: Biopolymer transport protein ExbD/TolR.	Biopolymer transport protein; PFAM: Autophagy-related protein 27; MotA/TolQ/ExbB proton channel family.	0.988
AFL96766.1	AFL96832.1	Ornrh_0565	Ornrh_0631	PFAM: Biopolymer transport protein ExbD/TolR.	Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.	0.929
AFL96766.1	AFL96901.1	Ornrh_0565	Ornrh_0703	PFAM: Biopolymer transport protein ExbD/TolR.	Hypothetical protein.	0.661
AFL96766.1	AFL97258.1	Ornrh_0565	Ornrh_1067	PFAM: Biopolymer transport protein ExbD/TolR.	Hypothetical protein.	0.708
AFL96829.1	AFL96765.1	Ornrh_0628	Ornrh_0564	PFAM: Biopolymer transport protein ExbD/TolR.	Biopolymer transport protein; PFAM: Autophagy-related protein 27; MotA/TolQ/ExbB proton channel family.	0.837
AFL96829.1	AFL96830.1	Ornrh_0628	Ornrh_0629	PFAM: Biopolymer transport protein ExbD/TolR.	PFAM: Biopolymer transport protein ExbD/TolR.	0.952
AFL96829.1	AFL96832.1	Ornrh_0628	Ornrh_0631	PFAM: Biopolymer transport protein ExbD/TolR.	Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.	0.984
AFL96829.1	AFL96901.1	Ornrh_0628	Ornrh_0703	PFAM: Biopolymer transport protein ExbD/TolR.	Hypothetical protein.	0.892
AFL96829.1	AFL97258.1	Ornrh_0628	Ornrh_1067	PFAM: Biopolymer transport protein ExbD/TolR.	Hypothetical protein.	0.708
AFL96829.1	AFL97327.1	Ornrh_0628	Ornrh_1142	PFAM: Biopolymer transport protein ExbD/TolR.	Hypothetical protein.	0.748
AFL96829.1	AFL97414.1	Ornrh_0628	Ornrh_1231	PFAM: Biopolymer transport protein ExbD/TolR.	Hypothetical protein.	0.743
AFL96830.1	AFL96765.1	Ornrh_0629	Ornrh_0564	PFAM: Biopolymer transport protein ExbD/TolR.	Biopolymer transport protein; PFAM: Autophagy-related protein 27; MotA/TolQ/ExbB proton channel family.	0.846
AFL96830.1	AFL96829.1	Ornrh_0629	Ornrh_0628	PFAM: Biopolymer transport protein ExbD/TolR.	PFAM: Biopolymer transport protein ExbD/TolR.	0.952
AFL96830.1	AFL96832.1	Ornrh_0629	Ornrh_0631	PFAM: Biopolymer transport protein ExbD/TolR.	Biopolymer transport protein; PFAM: MotA/TolQ/ExbB proton channel family.	0.985
AFL96830.1	AFL96901.1	Ornrh_0629	Ornrh_0703	PFAM: Biopolymer transport protein ExbD/TolR.	Hypothetical protein.	0.902

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Network Stats

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Functional enrichments in your networkNote: some enrichments may be expected here (why?)
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Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 114

1.55

3.35

2.24e-14

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003735

Structural constituent of ribosome

9 of 55

1.78

4.0

1.47e-12

GO:0019843

rRNA binding

7 of 42

1.78

3.3

2.02e-09

GO:0003723

RNA binding

8 of 121

1.38

2.08

2.56e-08

GO:0000049

tRNA binding

4 of 28

1.72

1.74

0.00013

GO:0003676

Nucleic acid binding

9 of 504

0.81

0.76

5.43e-05

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

9 of 63

1.72

3.82

8.73e-13

GO:0015935

Small ribosomal subunit

3 of 6

2.26

2.33

3.03e-05

GO:0005622

Intracellular anatomical structure

11 of 1355

0.47

0.41

0.00014

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:23342046

(2013) The genome sequences of Cellulomonas fimi and Cellvibrio gilvus reveal the cellulolytic strategies of two facultative anaerobes, transfer of Cellvibrio gilvus to the genus Cellulomonas, and proposal of Cellulomonas gilvus sp. nov.

3 of 32

1.53

0.95

0.0091

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:162

Ribosome

9 of 43

1.88

4.66

9.85e-14

CL:166

rRNA-binding

7 of 28

1.96

4.23

3.68e-11

CL:169

rRNA-binding

5 of 15

2.08

3.46

3.66e-08

CL:133

Translation, and Protein export

11 of 136

1.47

2.97

9.85e-14

CL:173

mRNA binding, and rRNA-binding

3 of 6

2.26

2.21

5.49e-05

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

sde03010

Ribosome

9 of 53

1.79

4.26

1.58e-13

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

7 of 52

1.69

2.92

9.28e-09

GOCC:0022626

Cytosolic ribosome

5 of 29

1.8

2.55

1.03e-06

GOCC:0044391

Ribosomal subunit

5 of 33

1.74

2.44

1.23e-06

GOCC:0022627

Cytosolic small ribosomal subunit

3 of 13

1.92

1.77

0.00024

GOCC:0043229

Intracellular organelle

9 of 280

1.07

1.29

3.19e-07

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0689

Ribosomal protein

9 of 55

1.78

4.11

4.44e-13

KW-0699

rRNA-binding

7 of 39

1.82

3.57

3.82e-10

KW-0820

tRNA-binding

3 of 19

1.76

1.43

0.0010

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