STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL97018.1PFAM: F5/8 type C domain. (919 aa)    
Predicted Functional Partners:
AFL98250.1
Hypothetical protein; PFAM: Peptide-N-glycosidase F, C terminal; Peptide-N-glycosidase F, N terminal.
  
     0.765
AFL97038.1
RagB/SusD family protein; PFAM: SusD family.
  
    0.761
AFL96464.1
Hypothetical protein.
  
     0.739
AFL97460.1
RagB/SusD family protein; PFAM: SusD family.
  
    0.726
AFL97819.1
Hypothetical protein.
  
     0.722
AFL97039.1
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
     0.706
AFL96463.1
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB dependent receptor; TonB-dependent Receptor Plug Domain; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
  
     0.689
AFL96774.1
N-acetyl-beta-hexosaminidase; PFAM: F5/8 type C domain; beta-N-acetylglucosaminidase; Glycosyl hydrolase family 20, domain 2.
  
   
 0.650
AFL98252.1
Dihydrodipicolinate synthase/N-acetylneuraminate lyase; PFAM: Dihydrodipicolinate synthetase family; Belongs to the DapA family.
  
     0.610
AFL96361.1
Hypothetical protein.
  
     0.601
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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