STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL97123.1Poly(3-hydroxybutyrate) depolymerase; PFAM: Phospholipase/Carboxylesterase. (294 aa)    
Predicted Functional Partners:
AFL97124.1
Hypothetical protein.
 
     0.835
AFL98180.1
PFAM: Fibronectin type III domain.
  
     0.648
AFL98185.1
Hypothetical protein; TIGRFAM: Por secretion system C-terminal sorting domain.
  
     0.577
AFL96304.1
Esterase/lipase; PFAM: alpha/beta hydrolase fold.
  
   
 0.507
murI
Glutamate racemase; Provides the (R)-glutamate required for cell wall biosynthesis.
       0.476
AFL97122.1
Putative oxygen-independent coproporphyrinogen III oxidase; Probably acts as a heme chaperone, transferring heme to an unknown acceptor. Binds one molecule of heme per monomer, possibly covalently. Binds 1 [4Fe-4S] cluster. The cluster is coordinated with 3 cysteines and an exchangeable S-adenosyl-L-methionine. Belongs to the anaerobic coproporphyrinogen-III oxidase family.
       0.476
AFL98179.1
Hypothetical protein.
  
     0.410
AFL98186.1
PDK repeat-containing protein.
  
     0.410
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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