Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AFL97260.1Trypsin-like serine protease with C-terminal PDZ domain; PFAM: Trypsin. (248 aa)    
Predicted Functional Partners:
AFL96460.1
Periplasmic serine protease, Do/DeqQ family; PFAM: Trypsin; PDZ domain (Also known as DHR or GLGF); TIGRFAM: periplasmic serine protease, Do/DeqQ family.
  
  
 
0.927
AFL97259.1
Outer membrane protein/peptidoglycan-associated (lipo)protein; PFAM: OmpA family.
   
   0.810
AFL97256.1
Hypothetical protein.
  
 
 0.782
AFL97258.1
Hypothetical protein.
       0.778
AFL97255.1
Hypothetical protein.
     
 0.681
AFL97257.1
Hypothetical protein.
       0.668
AFL97253.1
Hypothetical protein.
       0.644
AFL97254.1
Hypothetical protein.
       0.638
rplK
LSU ribosomal protein L11P; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
  
 
   0.608
AFL97262.1
Hypothetical protein.
  
    0.588
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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