STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL97424.1Periplasmic protease; PFAM: Peptidase family S41; PDZ domain (Also known as DHR or GLGF). (494 aa)    
Predicted Functional Partners:
AFL97425.1
Putative threonine efflux protein; PFAM: LysE type translocator.
       0.701
AFL97426.1
TIGRFAM: PEP-CTERM protein sorting domain.
       0.673
AFL98280.1
Hypothetical protein.
  
     0.624
AFL97423.1
Hypothetical protein.
       0.564
AFL97038.1
RagB/SusD family protein; PFAM: SusD family.
  
   0.549
AFL96306.1
Hypothetical protein.
  
     0.510
AFL97460.1
RagB/SusD family protein; PFAM: SusD family.
  
   0.457
AFL98478.1
RagB/SusD family protein; PFAM: SusD family.
  
   0.457
AFL98456.1
PFAM: Uncharacterized protein conserved in bacteria (DUF2264).
  
     0.447
AFL97492.1
RagB/SusD family protein; PFAM: SusD family.
  
   0.428
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.