STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL97535.1Fe-S-cluster-containing hydrogenase subunit; TIGRFAM: Tat (twin-arginine translocation) pathway signal sequence. (1056 aa)    
Predicted Functional Partners:
AFL97534.1
Cytochrome c, mono- and diheme variants family; PFAM: Class III cytochrome C family; Cytochrome c.
 
 
 0.999
AFL97536.1
PFAM: Polysulphide reductase, NrfD.
 
 
 0.999
AFL97537.1
PFAM: Protein of unknown function (DUF3341).
 
 
 0.999
AFL97538.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c.
 
 
 0.999
AFL97539.1
Hypothetical protein.
 
 
 0.999
AFL96931.1
Cytochrome c, mono- and diheme variants family; PFAM: Cytochrome c; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit III.
 
 
 0.992
AFL96649.1
Hypothetical protein.
  
 
 0.990
tuf
Translation elongation factor 1A (EF-1A/EF-Tu); This protein promotes the GTP-dependent binding of aminoacyl- tRNA to the A-site of ribosomes during protein biosynthesis.
  
 
 0.990
AFL96929.1
PFAM: Cytochrome C oxidase, mono-heme subunit/FixO; Cytochrome C and Quinol oxidase polypeptide I; TIGRFAM: cytochrome c oxidase, cbb3-type, subunit II; cytochrome c oxidase, cbb3-type, subunit I; Belongs to the heme-copper respiratory oxidase family.
  
  
 0.953
AFL98233.1
PFAM: NapC/NirT cytochrome c family, N-terminal region; TIGRFAM: cytochrome c nitrate reductase, small subunit.
  
 
 0.929
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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