STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL97607.1Arginase family hydrolase, arginase/agmainase/formiminoglutamate hydrolase; PFAM: Arginase family. (366 aa)    
Predicted Functional Partners:
topA
DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]
       0.836
AFL97609.1
TIGRFAM: gliding motility-associated protein GldL.
 
     0.778
AFL97827.1
PFAM: Cell division protein ZapA.
  
     0.754
AFL97608.1
PFAM: Formylglycine-generating sulfatase enzyme; TIGRFAM: gliding motility-associated lipoprotein GldK.
 
     0.711
AFL97611.1
TIGRFAM: gliding motility associated protien GldN.
 
     0.687
AFL97610.1
PFAM: GldM C-terminal domain; GldM N-terminal domain; TIGRFAM: gliding motility-associated protein GldM.
 
     0.685
AFL96609.1
TIGRFAM: gliding motility-associated protein GldC.
  
     0.668
AFL98243.1
Hypothetical protein.
  
    0.656
AFL98333.1
PFAM: Acyl-CoA reductase (LuxC).
 
 
 0.651
AFL97823.1
PFAM: ZIP Zinc transporter.
  
     0.637
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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