Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| AFL96607.1 | def | Ornrh_0400 | Ornrh_1476 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.903 |
| AFL96607.1 | rplI | Ornrh_0400 | Ornrh_2174 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.911 |
| AFL96607.1 | rplQ | Ornrh_0400 | Ornrh_0447 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17. | 0.891 |
| AFL96607.1 | rplU | Ornrh_0400 | Ornrh_1934 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.969 |
| AFL96607.1 | rplV | Ornrh_0400 | Ornrh_0469 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.922 |
| AFL96607.1 | rplX | Ornrh_0400 | Ornrh_0463 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.951 |
| AFL96607.1 | rpmA | Ornrh_0400 | Ornrh_1935 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.831 |
| AFL96607.1 | rpsP | Ornrh_0400 | Ornrh_1236 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.860 |
| AFL96607.1 | rpsT | Ornrh_0400 | Ornrh_1840 | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.840 |
| def | AFL96607.1 | Ornrh_1476 | Ornrh_0400 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor); PFAM: Bacterial trigger factor protein (TF); TIGRFAM: trigger factor. | 0.903 |
| def | fmt | Ornrh_1476 | Ornrh_0101 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | 0.957 |
| def | rplI | Ornrh_1476 | Ornrh_2174 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L9; Binds to the 23S rRNA. | 0.903 |
| def | rplQ | Ornrh_1476 | Ornrh_0447 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | PFAM: Ribosomal protein L17; TIGRFAM: ribosomal protein L17. | 0.916 |
| def | rplU | Ornrh_1476 | Ornrh_1934 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein L21; This protein binds to 23S rRNA in the presence of protein L20; Belongs to the bacterial ribosomal protein bL21 family. | 0.927 |
| def | rplV | Ornrh_1476 | Ornrh_0469 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L22P; The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome. | 0.924 |
| def | rplX | Ornrh_1476 | Ornrh_0463 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | LSU ribosomal protein L24P; One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit. | 0.903 |
| def | rpmA | Ornrh_1476 | Ornrh_1935 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | PFAM: Ribosomal L27 protein; TIGRFAM: ribosomal protein L27; Belongs to the bacterial ribosomal protein bL27 family. | 0.907 |
| def | rpsP | Ornrh_1476 | Ornrh_1236 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | PFAM: Ribosomal protein S16; TIGRFAM: ribosomal protein S16; Belongs to the bacterial ribosomal protein bS16 family. | 0.907 |
| def | rpsT | Ornrh_1476 | Ornrh_1840 | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | Ribosomal protein S20; Binds directly to 16S ribosomal RNA. | 0.906 |
| fmt | def | Ornrh_0101 | Ornrh_1476 | methionyl-tRNA formyltransferase; Attaches a formyl group to the free amino group of methionyl- tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus; Belongs to the Fmt family. | Peptide deformylase; Removes the formyl group from the N-terminal Met of newly synthesized proteins. Requires at least a dipeptide for an efficient rate of reaction. N-terminal L-methionine is a prerequisite for activity but the enzyme has broad specificity at other positions. | 0.957 |
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