STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL97986.1PFAM: Protein of unknown function (DUF1573). (170 aa)    
Predicted Functional Partners:
AFL97987.1
PFAM: Preprotein translocase subunit; TIGRFAM: preprotein translocase, YajC subunit.
       0.769
nusB
NusB antitermination factor; Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons.
       0.760
AFL97980.1
PFAM: Protein of unknown function (DUF3109).
  
     0.620
AFL97171.1
Hypothetical protein.
  
     0.568
AFL97648.1
Hypothetical protein.
 
     0.549
AFL96875.1
Hypothetical protein.
  
     0.544
AFL97984.1
Putative acyltransferase; PFAM: Acetyltransferase (GNAT) family.
       0.492
AFL97223.1
PFAM: Uroporphyrinogen-III synthase HemD.
  
     0.480
AFL97328.1
Long-chain fatty acid transport protein; PFAM: Outer membrane protein transport protein (OMPP1/FadL/TodX).
  
     0.445
AFL96534.1
PFAM: Bacterial membrane protein YfhO.
  
     0.437
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
Server load: medium (58%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.