STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL98004.1PFAM: Domain of unknown function (DUF1735). (391 aa)    
Predicted Functional Partners:
AFL98006.1
Hypothetical protein.
   
   0.800
AFL98005.1
Hypothetical protein.
       0.737
AFL98007.1
TonB-linked outer membrane protein, SusC/RagA family; PFAM: TonB-dependent Receptor Plug Domain; TonB dependent receptor; TIGRFAM: TonB-dependent outer membrane receptor, SusC/RagA subfamily, signature region; TonB-linked outer membrane protein, SusC/RagA family.
       0.693
AFL98011.1
Hypothetical protein.
   
   0.558
AFL98003.1
PFAM: Bacterial DNA-binding protein; TIGRFAM: DNA-binding protein, histone-like, putative.
       0.488
AFL98083.1
DNA segregation ATPase, FtsK/SpoIIIE family; PFAM: Ftsk gamma domain; FtsK/SpoIIIE family.
   
   0.454
AFL98008.1
PFAM: F5/8 type C domain; Domain of unknown function (DUF1735).
       0.449
AFL98010.1
PFAM: Glycosyl hydrolases family 18.
  
    0.435
AFL96950.1
Thioredoxin domain protein; PFAM: Protein of unknown function, DUF255.
    
   0.430
AFL98009.1
Hypothetical protein; PFAM: Domain of unknown function (DUF1735).
      
0.427
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.