STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL98029.1Hypothetical protein. (102 aa)    
Predicted Functional Partners:
AFL98276.1
Hypothetical protein.
  
     0.768
AFL97327.1
Hypothetical protein.
  
     0.759
AFL98280.1
Hypothetical protein.
  
     0.757
AFL97414.1
Hypothetical protein.
  
     0.747
AFL98028.1
PFAM: Deoxyhypusine synthase; TIGRFAM: deoxyhypusine synthase.
       0.718
AFL96302.1
DNA-binding protein, YbaB/EbfC family; Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection.
  
     0.717
AFL97880.1
Hypothetical protein.
  
     0.717
AFL98307.1
Smr domain-containing protein; PFAM: Smr domain.
  
     0.709
AFL96830.1
PFAM: Biopolymer transport protein ExbD/TolR.
  
     0.688
AFL98027.1
PFAM: Pyridoxal-dependent decarboxylase, C-terminal sheet domain; Pyridoxal-dependent decarboxylase, pyridoxal binding domain.
 
     0.641
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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