STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL98047.1PFAM: Plasmid pRiA4b ORF-3-like protein. (177 aa)    
Predicted Functional Partners:
AFL98048.1
Putative domain HDIG-containing protein; PFAM: HD domain; Poly A polymerase head domain; TIGRFAM: uncharacterized domain HDIG; Belongs to the tRNA nucleotidyltransferase/poly(A) polymerase family.
       0.801
AFL98045.1
PFAM: HAMP domain; Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; His Kinase A (phosphoacceptor) domain.
 
     0.774
AFL97628.1
PFAM: Protein of unknown function (DUF3098).
  
     0.769
AFL98426.1
Hypothetical protein.
  
     0.768
AFL97668.1
PFAM: Aminotransferase class IV.
  
     0.763
AFL97611.1
TIGRFAM: gliding motility associated protien GldN.
  
     0.756
AFL96478.1
Hypothetical protein.
  
     0.740
AFL98046.1
PFAM: Lumazine binding domain; TIGRFAM: riboflavin synthase, alpha subunit.
       0.727
AFL98213.1
Hypothetical protein.
  
     0.708
AFL96710.1
Hypothetical protein.
  
     0.705
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.