STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL98286.1TIGRFAM: RND family efflux transporter, MFP subunit; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family. (374 aa)    
Predicted Functional Partners:
AFL98290.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
 
 0.934
AFL98291.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: putative bacteriocin export ABC transporter, lactococcin 972 group.
 
 
 0.911
AFL97768.1
ABC-type antimicrobial peptide transport system, permease component; PFAM: Predicted permease.
 
 
 0.899
AFL98289.1
ABC-type transport system, involved in lipoprotein release, permease component; PFAM: Predicted permease.
 
   0.841
AFL97601.1
PFAM: Outer membrane efflux protein.
 
 
 0.828
AFL97767.1
PFAM: Outer membrane efflux protein.
 
 
 0.782
AFL97769.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter; TIGRFAM: putative bacteriocin export ABC transporter, lactococcin 972 group.
 
 
 0.770
AFL97408.1
Cation/multidrug efflux pump; PFAM: AcrB/AcrD/AcrF family; TIGRFAM: heavy metal efflux pump (cobalt-zinc-cadmium); The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
 
 
 0.763
AFL97040.1
ABC-type antimicrobial peptide transport system, ATPase component; PFAM: ABC transporter.
 
 
 0.602
AFL97444.1
PFAM: Outer membrane efflux protein.
 
 
 0.578
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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