STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AFL98333.1PFAM: Acyl-CoA reductase (LuxC). (348 aa)    
Predicted Functional Partners:
AFL97725.1
acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II; PFAM: Acyl-protein synthetase, LuxE.
 
 
 0.876
AFL96294.1
Hypothetical protein.
  
     0.757
AFL98334.1
Fe-S oxidoreductase.
 
  
 0.726
AFL97458.1
PFAM: Protein of unknown function (DUF2480).
  
     0.721
AFL97651.1
Hypothetical protein; PFAM: ATP-dependent Clp protease adaptor protein ClpS; Belongs to the ClpS family.
  
 
   0.706
AFL96651.1
Hypothetical protein.
  
     0.697
AFL96894.1
PFAM: GH3 auxin-responsive promoter.
 
 
 0.688
AFL96609.1
TIGRFAM: gliding motility-associated protein GldC.
  
     0.677
AFL97223.1
PFAM: Uroporphyrinogen-III synthase HemD.
  
     0.664
AFL98332.1
DNA polymerase III, beta subunit; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...]
 
    0.663
Your Current Organism:
Ornithobacterium rhinotracheale
NCBI taxonomy Id: 867902
Other names: O. rhinotracheale DSM 15997, Ornithobacterium rhinotracheale DSM 15997, Ornithobacterium rhinotracheale LMG 9086, Ornithobacterium rhinotracheale str. DSM 15997, Ornithobacterium rhinotracheale strain DSM 15997
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