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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB48300.1TIGRFAM: signal peptidase I, archaeal type. (211 aa)    
Predicted Functional Partners:
AGB49940.1
Putative membrane-associated Zn-dependent protease.
 
  
 0.853
AGB48722.1
Putative membrane protein; TIGRFAM: exosortase/archaeosortase family protein; archaeosortase A, PGF-CTERM-specific.
  
   
 0.782
atpE
Archaeal/vacuolar-type H+-ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.743
AGB48498.1
Putative membrane protein, required for N-linked glycosylation; TIGRFAM: oligosaccharyl transferase, archaeosortase system-associated.
 
  
 0.739
lig
ATP-dependent DNA ligase I; DNA ligase that seals nicks in double-stranded DNA during DNA replication, DNA recombination and DNA repair.
    
 0.731
AGB50227.1
Hypothetical protein.
 
     0.711
secD
Preprotein translocase subunit SecD; Involved in protein export.
 
  
 0.708
atpC
ATP synthase A1, C subunit; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
  
 0.693
AGB48749.1
Putative membrane protein, required for N-linked glycosylation; TIGRFAM: oligosaccharyl transferase, archaeosortase system-associated.
 
  
 0.691
secF
Preprotein translocase subunit SecF; Involved in protein export.
  
  
 0.690
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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