STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB48308.1Hypothetical protein. (89 aa)    
Predicted Functional Partners:
AGB48307.1
Hypothetical protein.
       0.934
AGB48309.1
Amino acid transporter.
     
 0.932
AGB48306.1
TIGRFAM: desulfoferrodoxin ferrous iron-binding domain.
       0.813
AGB48310.1
Hypothetical protein.
       0.711
AGB48312.1
TIGRFAM: methyltransferase cognate corrinoid proteins, Methanosarcina family.
     
 0.582
AGB48311.1
Monomethylamine methyltransferase MtmB; Manually curated.
       0.491
AGB48305.1
TIGRFAM: methyltransferase, MtaA/CmuA family.
     
 0.447
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.