Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
AGB48632.1Hypothetical protein. (240 aa)    
Predicted Functional Partners:
AGB48631.1
Short-chain dehydrogenase of unknown substrate specificity; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.625
AGB48630.1
NAD-dependent aldehyde dehydrogenase; Belongs to the aldehyde dehydrogenase family.
       0.570
AGB48629.1
Hypothetical protein.
       0.477
AGB48628.1
TIGRFAM: methyltransferase, MtaA/CmuA family.
 
     0.405
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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