STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB49246.1TIGRFAM: PAS domain S-box. (627 aa)    
Predicted Functional Partners:
AGB49565.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
   
 0.878
AGB50054.1
TIGRFAM: PAS domain S-box.
   
 0.829
AGB48738.1
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain.
   
 0.824
AGB49640.1
Methylase of chemotaxis methyl-accepting protein.
 
    
 0.706
AGB49247.1
TIGRFAM: PAS domain S-box.
 
   
0.590
AGB49245.1
TIGRFAM: LL-diaminopimelate aminotransferase.
       0.536
AGB48661.1
Histidine kinase.
 
   
 0.494
AGB49636.1
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
   
 0.483
AGB49325.1
TIGRFAM: PAS domain S-box.
   
0.427
AGB49705.1
Glycosyltransferase.
  
     0.410
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.