STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AGB49246.1TIGRFAM: PAS domain S-box. (627 aa)    
Predicted Functional Partners:
AGB49565.1
Response regulator containing a CheY-like receiver domain and an HD-GYP domain.
   
 0.879
AGB50054.1
TIGRFAM: PAS domain S-box.
   
 0.842
AGB48738.1
Response regulator with CheY-like receiver domain and winged-helix DNA-binding domain.
   
 0.825
AGB49640.1
Methylase of chemotaxis methyl-accepting protein.
 
    
 0.709
AGB49247.1
TIGRFAM: PAS domain S-box.
 
   
0.597
AGB49245.1
TIGRFAM: LL-diaminopimelate aminotransferase.
       0.537
AGB48661.1
Histidine kinase.
 
   
 0.496
AGB49636.1
Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain.
 
   
 0.487
AGB49325.1
TIGRFAM: PAS domain S-box.
   
0.440
AGB49705.1
Glycosyltransferase.
  
     0.410
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
Server load: medium (44%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.