STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB49401.1Arabinose efflux permease family protein. (380 aa)    
Predicted Functional Partners:
AGB49402.1
Phosphoglyceromutase.
     
 0.583
AGB49403.1
Putative redox protein, regulator of disulfide bond formation.
 
   0.492
AGB49407.1
Putative metal-binding protein.
 
     0.441
AGB49275.1
Hypothetical protein.
 
     0.439
AGB48453.1
Putative Zn-dependent protease.
  
     0.433
AGB50329.1
Putative Fe-S oxidoreductase.
 
  
 0.430
AGB49406.1
Iron-sulfur cluster biosynthesis protein, NifU-like protein.
 
   
 0.405
AGB49404.1
Hypothetical protein.
 
     0.400
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.