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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB50139.1ABC-type multidrug transport system, permease component; TIGRFAM: ABC transporter efflux protein, DrrB family. (368 aa)    
Predicted Functional Partners:
AGB50140.1
ABC-type multidrug transport system, ATPase component.
  
 0.958
AGB50141.1
Transcriptional regulator.
 
   
 0.824
AGB50461.1
TIGRFAM: daunorubicin resistance ABC transporter ATP-binding subunit.
  
 0.793
AGB50138.1
Hypothetical protein.
       0.773
AGB48400.1
ABC-type multidrug transport system, ATPase component; TIGRFAM: ATP-binding ABC transporter family nodulation protein NodI.
  
 0.717
AGB48339.1
ABC-type multidrug transport system, ATPase component.
  
 0.709
AGB49761.1
ABC-type multidrug transport system, ATPase component.
  
 0.699
AGB50137.1
Arabinose efflux permease family protein; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
 
   
 0.609
AGB50336.1
TIGRFAM: uncharacterized domain; putative methanogenesis marker protein 1; bacteriocin biosynthesis docking scaffold, SagD family.
  
  
 0.521
AGB48399.1
ABC-type polysaccharide/polyol phosphate export systems, permease component; TIGRFAM: ABC-2 type transporter, NodJ family.
  
  
  0.488
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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