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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB50141.1Transcriptional regulator. (204 aa)    
Predicted Functional Partners:
AGB50139.1
ABC-type multidrug transport system, permease component; TIGRFAM: ABC transporter efflux protein, DrrB family.
 
   
 0.824
AGB50140.1
ABC-type multidrug transport system, ATPase component.
     
 0.797
AGB50138.1
Hypothetical protein.
       0.777
AGB50054.1
TIGRFAM: PAS domain S-box.
  
  
 0.558
AGB48626.1
NADH:flavin oxidoreductase.
  
  
 0.526
AGB50137.1
Arabinose efflux permease family protein; TIGRFAM: drug resistance transporter, EmrB/QacA subfamily.
     
 0.511
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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