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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB50151.1TIGRFAM: UDP-N-acetylglucosamine 2-epimerase. (363 aa)    
Predicted Functional Partners:
AGB49980.1
TIGRFAM: nucleotide sugar dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
 
 0.970
AGB49680.1
TIGRFAM: UDP-N-acetylglucosamine 2-epimerase.
  
  
 
0.921
gmd
GDP-mannose 4,6-dehydratase; Catalyzes the conversion of GDP-D-mannose to GDP-4-dehydro-6- deoxy-D-mannose.
  
  
 0.630
AGB49982.1
Putative PLP-dependent enzyme possibly involved in cell wall biogenesis; Belongs to the DegT/DnrJ/EryC1 family.
  
  
 0.563
AGB49981.1
Putative dehydrogenase.
  
  
 0.515
AGB49940.1
Putative membrane-associated Zn-dependent protease.
   
 
 0.470
AGB49009.1
Glycosyltransferase.
 
  
 0.463
AGB48750.1
Glycosyltransferase.
 
  
 0.432
hisF
Imidazoleglycerol phosphate synthase, cyclase subunit; IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisF subunit catalyzes the cyclization activity that produces IGP and AICAR from PRFAR using the ammonia provided by the HisH subunit.
  
  
 0.423
AGB48752.1
Membrane protein involved in the export of O-antigen and teichoic acid.
  
  
 0.412
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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