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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB50300.1ABC-type metal ion transport system, periplasmic component/surface adhesin. (312 aa)    
Predicted Functional Partners:
AGB50301.1
ATPase component of Mn/Zn ABC-type transporter.
 
 
 0.999
AGB50302.1
ABC-type Mn2+/Zn2+ transport system, permease component.
 
 
 0.999
AGB50299.1
Mn-dependent transcriptional regulator.
  
  
 0.775
rps14
Ribosomal protein S14; Binds 16S rRNA, required for the assembly of 30S particles.
  
  
 0.689
AGB50054.1
TIGRFAM: PAS domain S-box.
  
  
 0.609
AGB49767.1
ABC-type cobalamin/Fe3+-siderophore transport system, ATPase component.
 
  
 0.561
AGB48910.1
Putative GTPase, G3E family.
  
  
 0.547
AGB49022.1
Putative GTPase, G3E family.
  
  
 0.547
AGB49520.1
Putative GTPase, G3E family.
  
  
 0.547
AGB48430.1
TIGRFAM: phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase.
     
 0.542
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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