Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB50317.1Putative membrane protein. (436 aa)    
Predicted Functional Partners:
AGB48458.1
Putative Zn-finger protein.
  
     0.621
AGB48692.1
Single-stranded DNA-binding protein.
  
     0.610
AGB50574.1
Putative ATPase.
  
     0.592
AGB50554.1
tRNA-guanine transglycosylase; PFAM: PUA domain; Queuine tRNA-ribosyltransferase; TIGRFAM: tRNA-guanine transglycosylases, various specificities; uncharacterized domain 2.
  
     0.584
AGB48926.1
PAP2 superfamily protein.
 
     0.577
AGB50316.1
Putative GTPase.
       0.576
AGB50480.1
Putative transcriptional regulator.
  
     0.536
AGB50110.1
Putative regulator of amino acid metabolism, contains ACT domain.
  
     0.527
AGB49837.1
Hypothetical protein.
  
     0.500
AGB50136.1
Hypothetical protein.
  
     0.497
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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