Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
AGB50328.1TIGRFAM: B12-binding domain/radical SAM domain protein, MJ_1487 family. (368 aa)    
Predicted Functional Partners:
AGB50326.1
Hypothetical protein.
       0.890
AGB50327.1
Hypothetical protein; Belongs to the UPF0107 family.
       0.890
AGB50325.1
TIGRFAM: UbiD family decarboxylases.
       0.837
AGB49732.1
Putative hydrocarbon binding protein (contains V4R domain).
 
  
 0.707
AGB49121.1
Hypothetical protein.
  
  
 0.630
gltX
glutamyl-tRNA synthetase, archaeal and eukaryotic family; Catalyzes the attachment of glutamate to tRNA(Glu) in a two- step reaction: glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu).
 
   
 0.550
AGB49034.1
TIGRFAM: polyphosphate:AMP phosphotransferase.
 
    0.497
AGB49194.1
Phytoene dehydrogenase-like oxidoreductase.
 
  
 0.472
AGB48690.1
Histones H3 and H4.
 
     0.469
dnaG
DNA primase; RNA polymerase that catalyzes the synthesis of short RNA molecules used as primers for DNA polymerase during DNA replication. Also part of the exosome, which is a complex involved in RNA degradation. Acts as a poly(A)-binding protein that enhances the interaction between heteropolymeric, adenine-rich transcripts and the exosome.
       0.448
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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