STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AGB50569.1Hypothetical protein. (49 aa)    
Predicted Functional Partners:
AGB50568.1
PFAM: Elongation factor Tu domain 2.
       0.773
AGB50566.1
CBS-domain-containing membrane protein; PFAM: CBS domain.
       0.603
AGB50567.1
PFAM: ATP dependent DNA ligase domain; TIGRFAM: RNA ligase, Pab1020 family.
       0.603
AGB50565.1
Putative signal-transduction protein containing cAMP-binding and CBS domains; PFAM: CBS domain.
       0.516
AGB50564.1
Putative transcriptional regulator, contains C-terminal CBS domains; PFAM: CBS domain.
       0.420
Your Current Organism:
Methanomethylovorans hollandica
NCBI taxonomy Id: 867904
Other names: M. hollandica DSM 15978, Methanomethylovorans hollandica DMS1, Methanomethylovorans hollandica DSM 15978, Methanomethylovorans hollandica str. DSM 15978, Methanomethylovorans hollandica strain DSM 15978
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.