Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
AEG18987.1UPF0216 protein; KEGG: mth:MTH949 hypothetical protein; HAMAP: UPF0216 protein; PFAM: Protein of unknown function DUF61; Belongs to the UPF0216 family. (135 aa)    
Predicted Functional Partners:
AEG18988.1
KEGG: msi:Msm_0432 hypothetical protein.
       0.796
AEG19138.1
Y414 protein; KEGG: mth:MTH1221 hypothetical protein; TIGRFAM: Y414; PFAM: ATP dependent DNA ligase, central.
  
     0.636
AEG17201.1
KEGG: mmg:MTBMA_c01570 glutamine synthetase; TIGRFAM: Glutamine synthetase type I; PFAM: Glutamine synthetase, catalytic region; Glutamine synthetase, beta-Grasp.
       0.611
AEG18749.1
UPF0278 protein; RNA-free RNase P that catalyzes the removal of the 5'-leader sequence from pre-tRNA to produce the mature 5'-terminus. Belongs to the HARP family.
  
     0.602
atpE
V-type proton ATPase subunit E; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.594
AEG17372.1
KEGG: mth:MTH890 hypothetical protein; PFAM: Toprim domain; SMART: Toprim domain, subgroup; Belongs to the UPF0292 family.
  
     0.588
AEG18986.1
KEGG: mmg:MTBMA_c13360 hypothetical protein.
       0.567
AEG17444.1
PFAM: Putative Fe-S cluster; KEGG: mmg:MTBMA_c02500 hypothetical protein.
  
     0.562
atpF
V-type ATP synthase subunit F; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.558
atpD
V-type ATP synthase subunit D; Produces ATP from ADP in the presence of a proton gradient across the membrane.
 
     0.518
Your Current Organism:
Methanobacterium paludis
NCBI taxonomy Id: 868131
Other names: DSM 25820, JCM 18151, M. paludis, Methanobacterium paludis Cadillo-Quiroz et al. 2014, Methanobacterium sp. SWAN1, strain SWAN1
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