STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AEF93513.1PFAM: Protein of unknown function DUF917; KEGG: drm:Dred_0395 hypothetical protein. (369 aa)    
Predicted Functional Partners:
AEF95323.1
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: drm:Dred_1547 hydantoinase/oxoprolinase.
    0.977
AEF93512.1
KEGG: drm:Dred_0394 hypothetical protein.
 
     0.854
AEF93514.1
KEGG: drm:Dred_0396 hypothetical protein.
 
     0.802
AEF95325.1
PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: drm:Dred_1545 permease for cytosine/purines, uracil, thiamine, allantoin.
     0.783
AEF95328.1
KEGG: drm:Dred_1542 N-methylhydantoinase A/acetone carboxylase beta subunit-like protein.
 
    0.782
AEF93442.1
PFAM: Permease, cytosine/purines, uracil, thiamine, allantoin; KEGG: tsi:TSIB_0822 permease for cytosine/purines, uracil, thiamine, allantoin.
     0.752
AEF94268.1
PFAM: Hydantoinase/oxoprolinase; Hydantoinaseoxoprolinase, N-terminal; KEGG: drm:Dred_1886 hydantoinase/oxoprolinase.
    0.662
AEF93511.1
SMART: ATPase, AAA+ type, core; TIGRFAM: Oligopeptide/dipeptide ABC transporter, ATP-binding protein, C-terminal; KEGG: drm:Dred_0393 oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter-like; Oligopeptide/dipeptide ABC transporter, C-terminal; Belongs to the ABC transporter superfamily.
       0.621
AEF93505.1
Transcriptional regulator, PucR family; PFAM: Purine catabolism PurC-like; KEGG: drm:Dred_0388 purine catabolism PurC domain-containing protein.
 
     0.405
Your Current Organism:
Desulfotomaculum nigrificans
NCBI taxonomy Id: 868595
Other names: D. nigrificans CO-1-SRB, Desulfotomaculum carboxydivorans CO-1-SRB, Desulfotomaculum carboxydivorans DSM 14880, Desulfotomaculum nigrificans CO-1-SRB
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